rs6156234 SNP Detail

Summary

• ID
  rs6156234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38706138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGAGTTT TCTTTATTTG
  AGCGCAGCCT TCTTTATGTA TATATTGGAT GGAATCCAGG GTCTAACTAG AGACTCCCCT
  GTCCCGTTAC ATAGTGTTAC AGTTCTGCCG TCAGCCGTGC GGATTCCCTG GGCAGAAGTA
  AACCTTTCTC CTGTTCCCAA ACCAAAACTG AAGAATTCGC CTGGATTCGT CCCTTTCCCT
  R
  AAAGCCTTCA ACCTGTAATC AAAAAGTCAG TTCCATCTCT GAAACCACTC TGAGTGACTC
  CTCTCCTCTC TTCCTATACC TAGACCCTCA CTTCAGGTCT CCTGTTCACT GCCTCGATCC
  CCAGGAGTAT GCATGCCCTC AGTCTATAGG ATAGGTTAGG TAGGTCACTG AGGAGTAGGA
  CACTTGAGTG TGTGTCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8561733	WI_WGS_1_39172649	WI	MOUSE	f	SNP							A		G
ss60719294	NES16354832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6156234					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719294	NES16354832	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38706138 () rs orientation: forward

Symbol	Name	Function Class
Rr366875	regulatory region 366875	1902 bp downstream
Rr409726	regulatory region 409726	1644 bp distal
Rr409727	regulatory region 409727	946 bp distal
Rr409728	regulatory region 409728	41 bp distal
Tssr11351	transcription start site region 11351	1458 bp upstream