rs6157441 SNP Detail

Summary

• ID
  rs6157441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14009154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTGCGG TTACTCAGTG
  TTAGCATAGC AGCTATTCAG CCTTCACGCG GTTCTCAACT CTGCAGAAAG CAACATGCAG
  AACTGTGAAA CAGCGACAGA CACTGCAGGA CCAGAGAGAG CATCTGCATC AACCAGAACT
  GCACCGTGAA CTTTGCATGG AAAGGTGCAC ATGTAATAAA TGCACAATTC AGGGACGGAC
  Y
  GCAATGCAAG TCAGGCAAGA GTCCCCTCTT GCTCCTTTTA GACATCATGC TCTTTTCCTC
  GTGGCCACCA GATGGCGACG CTACACCTCA AAACGCAAGT TTGATCCCTG TAGGAATGGA
  AACATCCCGT ATGTGCTATC CAGAGTCTTT TCTAAATACT GTATTTGACA AATTCATCCA
  TACTTTTGGG TGTAATTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8562945	WI_WGS_14_3748021	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6157441					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14009154 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	within coordinates
Rr298208	regulatory region 298208	within coordinates
Rr300930	regulatory region 300930	1287 bp proximal
Rr389289	regulatory region 389289	within coordinates