rs6157457 SNP Detail

Summary

• ID
  rs6157457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14009141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTGTTA GCATAGCAGC
  TATTCAGCCT TCACGCGGTT CTCAACTCTG CAGAAAGCAA CATGCAGAAC TGTGAAACAG
  CGACAGACAC TGCAGGACCA GAGAGAGCAT CTGCATCAAC CAGAACTGCA CCGTGAACTT
  TGCATGGAAA GGTGCACATG TAATAAATGC ACAATTCAGG GACGGACTGC AATGCAAGTC
  M
  GGCAAGAGTC CCCTCTTGCT CCTTTTAGAC ATCATGCTCT TTTCCTCGTG GCCACCAGAT
  GGCGACGCTA CACCTCAAAA CGCAAGTTTG ATCCCTGTAG GAATGGAAAC ATCCCGTATG
  TGCTATCCAG AGTCTTTTCT AAATACTGTA TTTGACAAAT TCATCCATAC TTTTGGGTGT
  AATTAGTATT CTGTCTTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8562961	WI_WGS_14_3748034	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6157457					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14009141 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	Intron
Rr389289	regulatory region 389289	within coordinates
Rr487788	regulatory region 487788	within coordinates
Rr487789	regulatory region 487789	47 bp distal