rs6158014 SNP Detail

Summary

• ID
  rs6158014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113283656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCTTAC CCTGCAGCAC
  TGTGGTGCGC TTTCCCAGCT GTAGCTTCAT CCCTAGTTTA GCTCCACCTT CCAGGCTTAC
  CCAAAGCTCC GCCCTTCGTT ACTTGGGCCC CTCGGGCCCA CTCTTCCGGC TGCGGTCGTC
  GCATCAGGGC ACCGCTTTCC CGCAGCTCCA CCCCCTAAAC ACAAGCCCCT CCCGCGCCGG
  M
  CTAGTCTTCC CACGTCGCCC CGCCCCTGAC CATATCTGCG GGCCTCTGCG GCTCCCTTGC
  GTTCGTCCGG CTCTAGGCCC TGCCCTCAAC TCCGCCCCAC CCGGCGCTCC CGCCCCGTTC
  CTCCCAGTCG CCTTCCTCGG AGACCAAGGC CAGGTCCCTA CCGCAGCAGT CGCGCCAGCA
  GGAGGGAGGG AGCAGGCGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8563519	WI_WGS_6_114218662	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6158014					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113283656 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	442 bp upstream
Cpgi17838	CpG island 17838	within coordinates
Cpne9	copine family member IX	1124 bp downstream
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	21 bp upstream
Gm67816	predicted gene, 67816	within coordinates
Rr399829	regulatory region 399829	22 bp downstream
Rr636483	regulatory region 636483	1049 bp distal
Rr636484	regulatory region 636484	within coordinates
Rr636485	regulatory region 636485	745 bp proximal
Rr636486	regulatory region 636486	1200 bp proximal
Rr636487	regulatory region 636487	1630 bp proximal
Tssr58189	transcription start site region 58189	255 bp upstream
Tssr58190	transcription start site region 58190	465 bp upstream
Tssr58191	transcription start site region 58191	544 bp upstream
Tssr58192	transcription start site region 58192	1146 bp upstream
Tssr58193	transcription start site region 58193	1172 bp upstream
Tssr62434	transcription start site region 62434	1072 bp downstream