rs6158077 SNP Detail

Summary

• ID
  rs6158077
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103023415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCGAGC CAGGGTCTCC
  AACTGGCGTC GCGCCCACCT CGTCCTTCAG ATGGGGGTCC GGCTACGCCG GGCCTGGCCG
  CCATACCCGG GATGAATGGG GGTGACGAGA GGCCTTGGGC AGACCTCGGC CTCAGGATCA
  CGTCCCGGTG GAAGCACAGC AGAGGGGAAG CCGTCTTACT GGCCTCTCCT CTGCTGGGAT
  M
  CCGGGAAATA CGCGGTAATT ACCCCAAAAG GCCGCTCTCA AAGGCGAGGC GGAGAGGCTG
  CCGGGACGGT TTGAGGACTG GGCTCGGCCG GGGAGACGCC AACCTTCACC CTTCCCAGCC
  CCCGACCCAA CTCCCCGCCG TCTCCCGGCG CCGCCACTTC AGGCAGCCCA CTCGGCCCGG
  CCTCTCCCCG CGCCCGGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8563582	WI_WGS_11_103916442	WI	MOUSE	f	SNP							C		A
ss37278540	NES08550427	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6158077					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278540	NES08550427	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103023415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	within coordinates
Gm57409	predicted gene, 57409	within coordinates
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Rr403011	regulatory region 403011	238 bp upstream
Rr457520	regulatory region 457520	within coordinates
Rr457521	regulatory region 457521	287 bp proximal
Rr457522	regulatory region 457522	767 bp proximal
Tssr105311	transcription start site region 105311	582 bp upstream
Tssr105312	transcription start site region 105312	714 bp upstream
Tssr105313	transcription start site region 105313	744 bp upstream
Tssr105314	transcription start site region 105314	774 bp upstream
Tssr105315	transcription start site region 105315	1442 bp upstream
Tssr111155	transcription start site region 111155	772 bp upstream
Tssr111156	transcription start site region 111156	264 bp downstream