rs6159169 SNP Detail

Summary

• ID
  rs6159169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14008838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAACAT CCCGTATGTG
  CTATCCAGAG TCTTTTCTAA ATACTGTATT TGACAAATTC ATCCATACTT TTGGGTGTAA
  TTAGTATTCT GTCTTGTGAA TATCGCACAG TTTATTTATC TCTTCTAGCA TACAAAGCCA
  GTTCTCTCCA GCTTGAGGCC CTTATGCTGC TTGGGTCTGC AGATCAACTA CAGTGTACAA
  Y
  GAGAAGGCGA AGCTTATTGA CAGTGCAGGT GGAGCTCTGT CAGCAATGGG TGACACACCG
  AATAACTGGG AATAAAGGCT CGCAGAGCAA CAGAGCAGGG AGGATGAGCC CCAGGGGTTC
  CATGGGAAAG TTAGGAAGGA CTTCTGACGT TAATGGGGGT ACCTGTGTAT ATATAGCTAA
  ATTAGCAGGA AATTCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8564682	WI_WGS_14_3748337	WI	MOUSE	f	SNP							T	C
ss49151738	NES12475901	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T			T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6159169					SNP	C	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49151738	NES12475901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14008838 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	within coordinates
Rr298208	regulatory region 298208	within coordinates
Rr300930	regulatory region 300930	1603 bp proximal
Rr389289	regulatory region 389289	203 bp upstream