rs6159188 SNP Detail

Summary

• ID
  rs6159188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14008828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTATGTG CTATCCAGAG
  TCTTTTCTAA ATACTGTATT TGACAAATTC ATCCATACTT TTGGGTGTAA TTAGTATTCT
  GTCTTGTGAA TATCGCACAG TTTATTTATC TCTTCTAGCA TACAAAGCCA GTTCTCTCCA
  GCTTGAGGCC CTTATGCTGC TTGGGTCTGC AGATCAACTA CAGTGTACAA TGAGAAGGCG
  R
  AGCTTATTGA CAGTGCAGGT GGAGCTCTGT CAGCAATGGG TGACACACCG AATAACTGGG
  AATAAAGGCT CGCAGAGCAA CAGAGCAGGG AGGATGAGCC CCAGGGGTTC CATGGGAAAG
  TTAGGAAGGA CTTCTGACGT TAATGGGGGT ACCTGTGTAT ATATAGCTAA ATTAGCAGGA
  AATTCCTCTG GGCACTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8564701	WI_WGS_14_3748347	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6159188					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14008828 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	within coordinates
Rr298208	regulatory region 298208	within coordinates
Rr300930	regulatory region 300930	1613 bp proximal
Rr389289	regulatory region 389289	213 bp upstream