rs6159205 SNP Detail

Summary

• ID
  rs6159205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113392688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTCAGA CTTCAAGCTT
  CAGTTCTGGC AGATCCTTCA TCATACTTCA GTTCTAATGT CACCACAGAC CAGCAGGCAG
  AGAGTCCCTG ACCCAGACCC ATGTCTCAAC TTTGGGACAA AGGGGTTGAA TCTTGATTCC
  CGTTTGCAGA GAATCTTGGT CCTGAAGGCC CAGAATCCCC CCAACATGCA TTTAGAATGG
  R
  AGAAGTTAGG ACTCACCTGC AGAGACAGTG ACCAGAGTCC CTTGGCCCCA GTAAGCAAAC
  CAGGCACATT GTGACAACAA TGATTAGACC CCTGACAATA AATGATCCTT GGCTAGGGCT
  CCAGGATGAT CTCAGATGGA GGCCAGTGAG GGACAAAGAA AGCATAGAAG AGAGGGACCT
  AGCGGCAATG CTGGCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8564718	WI_WGS_12_107710346	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6159205					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113392688 () rs orientation: forward

Symbol	Name	Function Class
Gm56536	predicted gene, 56536	1701 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1460 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	713 bp downstream
Ighj2	immunoglobulin heavy joining 2	400 bp downstream
Ighj3	immunoglobulin heavy joining 3	17 bp downstream
Ighj4	immunoglobulin heavy joining 4	501 bp upstream
Rr148	regulatory region 148	1430 bp distal
Rr149	regulatory region 149	1482 bp distal
Rr150	regulatory region 150	1339 bp distal
Rr554	regulatory region 554	1096 bp distal
Rr555	regulatory region 555	1662 bp distal
Rr403536	regulatory region 403536	1410 bp downstream
Tssr3971	transcription start site region 3971	1595 bp upstream
Tssr3972	transcription start site region 3972	1555 bp upstream
Tssr3973	transcription start site region 3973	1537 bp upstream
Tssr115504	transcription start site region 115504	1159 bp upstream
Tssr118001	transcription start site region 118001	1774 bp upstream
Tssr118002	transcription start site region 118002	1738 bp upstream
Tssr118003	transcription start site region 118003	1672 bp upstream
Tssr118004	transcription start site region 118004	1646 bp upstream
Tssr118005	transcription start site region 118005	521 bp upstream
Tssr118006	transcription start site region 118006	490 bp upstream
Tssr118007	transcription start site region 118007	444 bp upstream
Tssr118008	transcription start site region 118008	417 bp upstream
Tssr118009	transcription start site region 118009	406 bp upstream
Tssr118010	transcription start site region 118010	268 bp upstream
Tssr118011	transcription start site region 118011	170 bp upstream
Tssr118012	transcription start site region 118012	40 bp downstream
Tssr118013	transcription start site region 118013	68 bp downstream
Tssr118014	transcription start site region 118014	174 bp downstream
Tssr118015	transcription start site region 118015	240 bp downstream
Tssr118016	transcription start site region 118016	422 bp downstream
Tssr118017	transcription start site region 118017	752 bp downstream
Tssr118018	transcription start site region 118018	1308 bp downstream
Tssr118019	transcription start site region 118019	1325 bp downstream
Tssr118020	transcription start site region 118020	1381 bp downstream
Tssr118021	transcription start site region 118021	1521 bp downstream
Tssr118022	transcription start site region 118022	1553 bp downstream
Tssr118023	transcription start site region 118023	1718 bp downstream