rs6160106 SNP Detail

Summary

• ID
  rs6160106
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGATGGA ACTCAGGTTG
  TCTGGCTTTA TGGCAATGTT GAGCCATGTT ATTGACCACT TTTCTTTTTT TTTTTTTTTC
  TTTTTTTTTT TTTTTTTAAA GATGAGGGCC TCCCAGTAGC CCTGGCTAGC TTTGACAGCA
  ATCACATGGG CCACCATACT CAGCTTTTGG TGGGCATTTT GAATCAGGGT GTCCTAGCAC
  W
  CACTGGCTTG TTACTGCTTC TAGCCTGGGC TGGTGTGAAG CTCCTTTCTC AGTTTCCCAA
  GGCGAGGATT ACAGCTGTAC ATGTTGGGCC TGGCTAAGTA CCCTTTAAGT ATGGCTGAAC
  TCAGTATTCT CTTAAGACCC TACTCCTTAT GCCCTCTGCT TTGAGAGTAC CCCCAAGGCC
  TGGCACACAC CAAACTTAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8565622	WI_WGS_8_3509203	WI	MOUSE	f	SNP							T		A
ss61076727	NES16055134	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T		A		T	T	T	T	T	T	A	T
ss148546623	ENSMUSSNP700995	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6160106					SNP	A	T	T	T	T	T	T	A	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076727	NES16055134	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646625 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	425 bp distal
Rr189485	regulatory region 189485	1776 bp proximal
Rr381636	regulatory region 381636	798 bp upstream
Tssr76064	transcription start site region 76064	101 bp downstream
Tssr76065	transcription start site region 76065	1690 bp upstream
Tssr76066	transcription start site region 76066	1714 bp upstream
Tssr76067	transcription start site region 76067	1729 bp upstream
Tssr76068	transcription start site region 76068	1746 bp upstream
Tssr76069	transcription start site region 76069	1818 bp upstream
Tssr76070	transcription start site region 76070	1968 bp upstream