rs6160452 SNP Detail

Summary

• ID
  rs6160452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68735987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCCCAT AGAGCAAGTA
  CTGACATGTC CAAACAAGCC ATCTTTGATC TGGTGGAGCA AATCCACTTT CTGAATCTAT
  GGCCTGATAC ATGTCCCTCC TCTTTCATTT TCCCCCTGGC CCAAGGCTTT CTGTCCTAAG
  AGAAACTCCA GAGTCACCAC TCACTTCAGG AGCTTGGATA GAGCAGGGTT AGAGGGCCGA
  R
  GAGCTGGCTC AGTGAGTTAA AGAATTGGCT GTTCGTGCAT AAGGAACCTT GAGATCAAAT
  TGCCAGCACC CAAAGAAGCC AGGAATGGGT GCAGAGTCAG GAGGATTTCT GGGATTTGCA
  GGCTATCAGT CTGGCTACAG ATTGAATAAG AGACCCTGTC ACAAAGGAGT GTGGTAGAGA
  GTGAGTGCTG GGGAGGCGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8565968	WI_WGS_9_69424694	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6160452					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68735987 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr8	DNA segment, Chr 9, Derry C. Roopenian 8	211 bp proximal
D9Mit260	DNA segment, Chr 9, Massachusetts Institute of Technology 260	219 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr383535	regulatory region 383535	within coordinates