rs6160800 SNP Detail

Summary

• ID
  rs6160800
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98156265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCTGCCCG GGCATGTCCT GGTCTGTTCT GCTATGTTCT
  CAGCCCCAGG TTTCAAAGCT CACAAACAAC TCTTTGGGCT ATTTGACATA CATTACATGA
  W
  TCACAGGTCT CAAGTCTTAT TTCCTTTCAG AACAAGCAAT ACCTTAGCTC CCCCAGAGCA
  GCCAACATAG GAGGGAATGT ATTTTGGTTG CTTAAATTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss8566317	WI_WGS_15_99168496	WI	MOUSE	f	SNP	T			A
ss148453829	ENSMUSSNP3771147	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T
ss325078976	CHEV_15_98088815	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs6160800					SNP	T	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98156265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1201 bp distal
H1f7	H1.7 linker histone	1091 bp upstream
Rr311340	regulatory region 311340	1501 bp distal
Rr391174	regulatory region 391174	within coordinates
Tssr136230	transcription start site region 136230	1072 bp upstream
Tssr136231	transcription start site region 136231	952 bp upstream