rs6160954 SNP Detail

Summary

• ID
  rs6160954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116484931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGTCCCG CCCATCCACT
  TCCGGATCCT CCCCCCTCGG ATTTAAAGGA CTAGGACTCA ACACCTTTCT GTCACAAGGA
  CACAGCCCTG TATCCCTTCC CGTTTGGGTA TCTTCCCGCC CTAGCCCGTT TTTCCTTAAA
  AAAAGAAAAA AAGAAAAAGA AAGTAAGATA GAAAGGAAAA AGAAAACAAA AATCAAACAA
  Y
  TTCCTGCTTC TGTGGCTAGT CGTGATAGAA GCAAAATCTC AGTACTACAA CTTCTGAATG
  GGAGCCAGCC TAGAGATTCC ACAATTAAGT GGAGCCAGTG AGTCTCTGCG ACTGTGGAAA
  AAGTAGTCCC GAAGGTGTCT TTCTGACGGG GATACCCGAG AAGGTGACAG GTATTCCCTA
  TGTCCTCTCA GTCTTAACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8566472	WI_WGS_4_114390425	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6160954					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116484931 () rs orientation: forward

Symbol	Name	Function Class
A430091L06Rik	RIKEN cDNA A430091L06 gene	within coordinates
Cpgi14636	CpG island 14636	220 bp distal
Nasp	nuclear autoantigenic sperm protein (histone-binding)	within coordinates
Rr84401	regulatory region 84401	1070 bp proximal
Rr99808	regulatory region 99808	within coordinates
Rr398403	regulatory region 398403	734 bp downstream
Rr398404	regulatory region 398404	39 bp downstream
Rr398405	regulatory region 398405	129 bp upstream
Tssr42894	transcription start site region 42894	337 bp upstream
Tssr42895	transcription start site region 42895	231 bp upstream
Tssr42896	transcription start site region 42896	162 bp downstream
Tssr42897	transcription start site region 42897	187 bp downstream
Tssr42898	transcription start site region 42898	238 bp downstream