rs6161394 SNP Detail

Summary

• ID
  rs6161394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152386334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTTGACAGCT
  GTCTCTGGAT TCTATACTTA GTCCTAGAAC AGCTCAGCCA GAGAGTGGAA CAGGAGCCTG
  GGAAGATCAC CTGGGGCCCA GACGTCCATC CCATCAGTGG TACATGGGCC ATGGGGATGC
  TGGTGACCCC ATAATGGGGT GGGAAGGGCA AGTGACTGGC ATTTCTTTCA AAGCTTTGTG
  TTTCCGAGAT GGAGACATGT CAGGAGTGTC ATGATGTTAC TCTTGCCCTG GGGACACACC
  R
  AGGGGAGGCG ATGAATGTAA TCTGCCTTAA GTGCTTGTAT GTGCCTAAGT GCTTTNGAGA
  GGAAAGATTT TTCATACCTT TTTNGATAAT GGGTATTTTC TACATTGTGC CCTGGTACTT
  GTGCTTGCCT GCGTGTGTGA GGGGCTAGGT GCTTGCACGC ATGTGTGGAA GATAAGTCTT
  ACCTGCAACA GTATTTACCC TTTAACAAAA CACGGATTTA TCCTCTTAAC TGGAATGGTG
  CTGGTGAGAC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8566912	WI_WGS_4_147710078	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6161394					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152386334 () rs orientation: forward

Symbol	Name	Function Class
Gm70210	predicted gene, 70210	1410 bp downstream
Icmt	isoprenylcysteine carboxyl methyltransferase	within coordinates
Rr605836	regulatory region 605836	1354 bp proximal