rs6161413 SNP Detail

Summary

• ID
  rs6161413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3646890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTACAG CTGTACATGT
  TGGGCCTGGC TAAGTACCCT TTAAGTATGG CTGAACTCAG TATTCTCTTA AGACCCTACT
  CCTTATGCCC TCTGCTTTGA GAGTACCCCC AAGGCCTGGC ACACACCAAA CTTAACTCCC
  TCAATTTCCT CAAAGTACTT GCTCTCTGCC TGACTTTGGC ATCTTTATCC TGTAGGTGAC
  Y
  TCACACTCAT CCCAGCCACT AAGATGACAG AGGGGATAGA GTTTGCTTAA GGCCTGAGTT
  TGAGTCTCAG TCCTGGCACT GGAGACCCAC GTAGCCTTAG GCTGGTCACT TTCCGTCCCT
  GTACATTTTC TGTGAAGTTT GTTCCCATCT GTAAAACGAA GTTTCCAGGG ATAAGGATGG
  TGCTCGATGA GGCTACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8566931	WI_WGS_8_3509468	WI	MOUSE	f	SNP							T		C
ss61076725	NES16055136	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C		T	T	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6161413					SNP	C	T	T	T	T	T	T	C	C	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076725	NES16055136	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3646890 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr180906	regulatory region 180906	690 bp distal
Rr189485	regulatory region 189485	1511 bp proximal
Rr381636	regulatory region 381636	533 bp upstream
Tssr76064	transcription start site region 76064	366 bp downstream
Tssr76065	transcription start site region 76065	1425 bp upstream
Tssr76066	transcription start site region 76066	1449 bp upstream
Tssr76067	transcription start site region 76067	1464 bp upstream
Tssr76068	transcription start site region 76068	1481 bp upstream
Tssr76069	transcription start site region 76069	1553 bp upstream
Tssr76070	transcription start site region 76070	1703 bp upstream
Tssr76071	transcription start site region 76071	1752 bp upstream