rs6161589 SNP Detail

Summary

• ID
  rs6161589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112976829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GGTTTCCTAG GTACAAGCCT
  Y
  ACTACTGGCC CCAATAGGGC TGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8567108	WI_WGS_12_107292337	WI	MOUSE	f	SNP								T		C
ss39027361	mCV23887946	ABI	CRAMUS_MOUSE	f	SNP		T	C					T			T
ss61722773	NES17660107	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C		C		T	C	C		T	T	C	C		C
ss138730656	ENSMUSSNP7129799	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C								T
ss324172770	CHEV_12_114251420	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6161589					SNP	T	T	C	T	T	T	C	T	C	C	T	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61722773	NES17660107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112976829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	575 bp proximal
Gm61130	predicted gene, 61130	131 bp downstream
Pacs2	phosphofurin acidic cluster sorting protein 2	1299 bp upstream
Tssr115451	transcription start site region 115451	1176 bp upstream
Tssr115452	transcription start site region 115452	1293 bp upstream
Tssr115453	transcription start site region 115453	1306 bp upstream
Tssr115454	transcription start site region 115454	1337 bp upstream
Tssr115455	transcription start site region 115455	1350 bp upstream
Tssr117933	transcription start site region 117933	1015 bp downstream