rs6161596 SNP Detail

Summary

• ID
  rs6161596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68736152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGCTT GGATAGAGCA
  GGGTTAGAGG GCCGAGGAGC TGGCTCAGTG AGTTAAAGAA TTGGCTGTTC GTGCATAAGG
  AACCTTGAGA TCAAATTGCC AGCACCCAAA GAAGCCAGGA ATGGGTGCAG AGTCAGGAGG
  ATTTCTGGGA TTTGCAGGCT ATCAGTCTGG CTACAGATTG AATAAGAGAC CCTGTCACAA
  R
  GGAGTGTGGT AGAGAGTGAG TGCTGGGGAG GCGGAGGTAG GAAGGATACC TGATGCCCTC
  CTCTGACTTC TGTGTAACAC ACACACACAC ACACACACAC ACACACACAC ACGTTAGTGT
  TACTCCTACA GTCTCCATGA TACTCAGATA AAAAGCAGCT TCATGGCATT GCCGTCCCCC
  CTTTTGGAAT TCTAGCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8567115	WI_WGS_9_69424859	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6161596					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68736152 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr8	DNA segment, Chr 9, Derry C. Roopenian 8	46 bp proximal
D9Mit260	DNA segment, Chr 9, Massachusetts Institute of Technology 260	54 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Rr196899	regulatory region 196899	1049 bp proximal
Rr204715	regulatory region 204715	1041 bp proximal
Rr210394	regulatory region 210394	353 bp distal
Rr383535	regulatory region 383535	within coordinates