rs6161694 SNP Detail

Summary

• ID
  rs6161694
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24035295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAACACCAGC
  CAGGAGAGGG AGGTCCCGGT CTAGAACGCC AGCCAGAAGA AGCGCTCGAT CTCGGTCTAG
  AACGCCAGCC AGGAGAGGGA GGTCACGATC CAGAACACCA GCACGACGAC GATCTCGAAG
  TAGAAGTCTT GTGAGACGTG GAAGATCTCA CTCTAGAACA CCACAAAGAA GAGGACGATC
  TGGCTCATCC TCAGAGAGGA AGAACAAATC TAGAACATCT CAGAGGAGAA GCAGATCCAA
  Y
  TCAAGCCCAG AAATGAAAAA ATCTCACGTT TCCTCAAGAC GGAGCAGGTC TCTTTCTTCA
  CCACGATCCA AAGCAAAATC TTTGAGGCGA AGCCTTTCAG GTTCCTCTCC ATGTCCTAAA
  CAAAAGTCAC AGACACCAAC CAGGCGAAGT CGTTCTGGTT CTTCACCACC TAAACAAAAG
  TCAAAAACAC CACCAAGACA GAGTCGTTCA AATTCTCCTC AGCCTAAAGT AAAATCTGGA
  ACACCACCAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8567214	WI_WGS_17_23006265	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6161694					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24035295 () rs orientation: forward

Symbol	Name	Function Class
Rr340683	regulatory region 340683	within coordinates
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142965	transcription start site region 142965	1130 bp downstream
Tssr142966	transcription start site region 142966	1083 bp downstream
Tssr142967	transcription start site region 142967	1037 bp downstream
Tssr142968	transcription start site region 142968	1016 bp downstream
Tssr142969	transcription start site region 142969	254 bp downstream
Tssr142970	transcription start site region 142970	220 bp downstream
Tssr142971	transcription start site region 142971	151 bp downstream
Tssr142972	transcription start site region 142972	113 bp downstream
Tssr142973	transcription start site region 142973	90 bp downstream
Tssr142974	transcription start site region 142974	52 bp downstream
Tssr142975	transcription start site region 142975	32 bp downstream
Tssr142976	transcription start site region 142976	3 bp downstream
Tssr142977	transcription start site region 142977	37 bp upstream
Tssr142978	transcription start site region 142978	82 bp upstream
Tssr146670	transcription start site region 146670	1051 bp upstream