rs6161970 SNP Detail

Summary

• ID
  rs6161970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152386418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCCATAA TGGGGTGGGA
  AGGGCAAGTG ACTGGCATTT CTTTCAAAGC TTTGTGTTTC CGAGATGGAG ACATGTCAGG
  AGTGTCATGA TGTTACTCTT GCCCTGGGGA CACACCGAGG GGAGGCGATG AATGTAATCT
  GCCTTAAGTG CTTGTATGTG CCTAAGTGCT TTAGAGAGGA AAGATTTTTC ATACCTTTTT
  R
  GATAATGGGT ATTTTCTACA TTGTGCCCTG GTACTTGTGC TTGCCTGCGT GTGTGAGGGG
  CTAGGTGCTT GCACGCATGT GTGGAAGATA AGTCTTACCT GCAACAGTAT TTACCCTTTA
  ACAAAACACG GATTTATCCT CTTAACTGGA ATGGTGCTGG TGAGACACTG GCTGATCTCC
  AGCTCAGTAA AAGGTTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8567490	WI_WGS_4_147710162	WI	MOUSE	f	SNP			A	G
ss45620061	mCV23461455	ABI	CRAMUS_MOUSE	f	SNP	G	A	A		A
ss148080449	ENSMUSSNP6698402	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			A
ss321434089	CHEV_4_151676070	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6161970					SNP	G	A	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152386418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm70210	predicted gene, 70210			1326 bp downstream
Icmt	isoprenylcysteine carboxyl methyltransferase			Intron
				Noncoding-Transcript-Variant
Rr605836	regulatory region 605836			1270 bp proximal