rs6162448 SNP Detail

Summary

• ID
  rs6162448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98156517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAATTTTG GATCACACAC ACACAAAGAC TTTCATGAGT
  GTTCTTTATT CTACACCAAC AGAAATCTCT AATACATTTC CATATCTCTA GTTGGTTTTC
  R
  GCTACCTTCC ATTCTTCCTC CTTTCCCCTT TACTTACCTG TTTCATTATT TGCATACTGA
  TATCCTTCTC TCTGATCTAT CAACTGCACT TTCTTAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8567968	WI_WGS_15_99168748	WI	MOUSE	f	SNP	G					A
ss51761472	NES14553556	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G		G	G	A	G		G	G	G	G		G
ss148453840	ENSMUSSNP1719470	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss325078977	CHEV_15_98089067	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6162448					SNP	G	A	G	A	G	A	G	G	A	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51761472	NES14553556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98156517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1453 bp distal
H1f7	H1.7 linker histone	1343 bp upstream
Rr311340	regulatory region 311340	1753 bp distal
Rr391174	regulatory region 391174	within coordinates
Tssr136230	transcription start site region 136230	1324 bp upstream
Tssr136231	transcription start site region 136231	1204 bp upstream