rs6163843 SNP Detail

Summary

• ID
  rs6163843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57956409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCT CCCGCGTCCG CCAAGGCGCC
  Y
  GGGCAGGCCG CGCCTAGACC ACGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8569365	WI_WGS_4_56865154	WI	MOUSE	f	SNP	T	C
ss321136103	CHEV_4_57969281	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6163843					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57956409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	within coordinates
Gm35344	predicted gene, 35344	343 bp upstream
Gm57068	predicted gene, 57068	within coordinates
Rr398279	regulatory region 398279	within coordinates
Rr592848	regulatory region 592848	9 bp distal
Rr592849	regulatory region 592849	623 bp distal
Rr592850	regulatory region 592850	within coordinates
Rr592851	regulatory region 592851	18 bp proximal
Rr592852	regulatory region 592852	325 bp proximal
Rr592853	regulatory region 592853	826 bp proximal
Tssr1183	transcription start site region 1183	51 bp upstream
Tssr1184	transcription start site region 1184	7 bp downstream
Tssr37396	transcription start site region 37396	213 bp upstream
Tssr37397	transcription start site region 37397	515 bp upstream
Tssr41866	transcription start site region 41866	111 bp upstream
Txn1	thioredoxin 1	mRNA-UTR