rs6164244 SNP Detail

Summary

• ID
  rs6164244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:89269295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCTGA TCTGTAGTCC
  TCGCCATGCT CCTGGGCACT CTGGAGGCTG GCGGGCCCCT CTGGGGCTGG GATGGTGATG
  ACGGAGATGA TGACTGGGAG GCGGTTGTAC TCACCTTGCT GGCACTAGCG GTGGTAGCCA
  CCTTAGCACT GGCTTTGCAC TGGTTTGGCT CCAGGGAGGA GCAGGAGACA GCATCTGCAG
  Y
  CCCAGGTGTG CAACCTGCTC AGGCAGGAGG AGCCAGGCAG GCCCTGCACC CAAAGCCCAA
  GGACAGTGAG GGGCAGAGCA AGGGACAGCA GACACCAGAG GCTCCTGGAG ATGTCCAGAG
  GAGGTCTGCT GCAGCTAGGA CCCAGGACCC AGGGCCATCG ATAGACAGAA GTATGGCTTC
  AGATGCCCGG CTGCTGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8569767	WI_WGS_15_90227562	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6164244					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:89269295 () rs orientation: forward

Symbol	Name	Function Class
Gm62017	predicted gene, 62017	within coordinates
Klhdc7b	kelch domain containing 7B	within coordinates
Tssr4689	transcription start site region 4689	225 bp downstream
Tssr132668	transcription start site region 132668	208 bp downstream
Tssr132669	transcription start site region 132669	193 bp downstream
Tssr132670	transcription start site region 132670	182 bp downstream