rs6164689 SNP Detail

Summary

• ID
  rs6164689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:89269362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGGTG ATGACGGAGA
  TGATGACTGG GAGGCGGTTG TACTCACCTT GCTGGCACTA GCGGTGGTAG CCACCTTAGC
  ACTGGCTTTG CACTGGTTTG GCTCCAGGGA GGAGCAGGAG ACAGCATCTG CAGCCCCAGG
  TGTGCAACCT GCTCAGGCAG GAGGAGCCAG GCAGGCCCTG CACCCAAAGC CCAAGGACAG
  Y
  GAGGGGCAGA GCAAGGGACA GCAGACACCA GAGGCTCCTG GAGATGTCCA GAGGAGGTCT
  GCTGCAGCTA GGACCCAGGA CCCAGGGCCA TCGATAGACA GAAGTATGGC TTCAGATGCC
  CGGCTGCTGC ACAAGACAAC TGGAGAGGTG ACCACCAGAG GGGCCACCCT AGCAGCCCTG
  GGAAAGAAAA GAAAGGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8570219	WI_WGS_15_90227629	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6164689					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:89269362 () rs orientation: forward

Symbol	Name	Function Class
Gm62017	predicted gene, 62017	within coordinates
Klhdc7b	kelch domain containing 7B	within coordinates
Tssr4689	transcription start site region 4689	292 bp downstream
Tssr132668	transcription start site region 132668	275 bp downstream
Tssr132669	transcription start site region 132669	260 bp downstream
Tssr132670	transcription start site region 132670	249 bp downstream