rs6164887 SNP Detail

Summary

• ID
  rs6164887
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80075935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCTTCATTCC
  ATAGCTGCGG AAGTCGATTC CTGACAGNGC TGGCCTCGGT GTGACTCTAG GATTTGCTTG
  GCTTTTCTGT TTCCTACTGC TAATGAGATA GGACCACCTT TCCGGGTGTG GGCAGCTTGA
  GCCTCGTAGG TAGCAGGGAG TTGAGGGCCA GGGGCTCCTG TCAGATTCGT CCTCCCACTG
  GCCTCTGGGT TCCTGAAGAT GCCTGTGAAC AGTTCAAGTG GGTGTGGCTC AATGAGGAGG
  S
  TCCAAGCTTC CACAGAATCT CACAGGAGCC GGGTTCACCT TCTTCCAATT GAAGCTGTTA
  ATCATTAATC GCTTGCTCTC TCTGTTGTTC AGTTCCTCTC TGGTCTCGTC TGTTTTGAAG
  GTCAAACCCT GCCCCTCTCC TCAGACTCTA TGTCAGCCTC TCACTAGAGA AATGGGAAGG
  GCCTTCATCT ACAGGCAAGT CTTGGTATCT TAGCTCCCTG TCTCCTTCCC ACTGAGGGGC
  TATGGGCAGC                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8570419	WI_WGS_15_80923186	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6164887					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80075935 () rs orientation: forward

Symbol	Name	Function Class
Gm63613	predicted gene, 63613	within coordinates
Mgat3	mannoside acetylglucosaminyltransferase 3	within coordinates
Rr505907	regulatory region 505907	1329 bp distal
Rr505908	regulatory region 505908	within coordinates
Rr505909	regulatory region 505909	778 bp proximal
Rr505910	regulatory region 505910	1279 bp proximal
Tssr4660	transcription start site region 4660	1376 bp upstream
Tssr132185	transcription start site region 132185	111 bp upstream
Tssr132186	transcription start site region 132186	428 bp upstream
Tssr132187	transcription start site region 132187	1266 bp upstream
Tssr132188	transcription start site region 132188	1319 bp upstream
Tssr132189	transcription start site region 132189	1339 bp upstream