rs6165089 SNP Detail

Summary

• ID
  rs6165089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:140414049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCACCCC CAAACTTGAG
  CGATTGGAGC ACTAACTCCC TTACTGTGGT TTCACCTTCC TGGGCTGCAG TGACACAGAG
  TCCCACAGCA GGAAGATTGT CCCTTGGCTC TTCCAGGAGA GAGACCACAC AGACAGAACT
  CACTACAGAG TGTGTTCATA TGGTTGTGTT CTGTTGTCTT TGTATACTTC TCATGGGCAT
  W
  TGTGTATATG TACCTGTAGG AAAAACATGC ACTGGGCTGG GTACTGTGAG GTTCTGGAAC
  ATACCCCTTG ATAAAGTGGG CCTGCCTGTG TGCTCGCCTC TGAGGGGGCA CTGCCTAGCA
  ACCACCATGT GCTTCGTGTG ATACTTTGAT TCCAGATACT ACTCAGTGCC AGCACTGTTC
  CATAATGTCA CACAGATCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8570621	WI_WGS_5_139326138	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6165089					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:140414049 () rs orientation: forward

Symbol	Name	Function Class
D5Dcr24	DNA Segment, Chr 5, Derry C. Roopenian 24	1066 bp distal
Eif3b	eukaryotic translation initiation factor 3, subunit B	within coordinates
Mir7038	microRNA 7038	885 bp downstream