rs6165490 SNP Detail

Summary

• ID
  rs6165490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58998982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATTCTAC CACACAAAAG
  AATTTTCAAT TATATTTGTC ATAAACCTAA GCCTTGTTTT GCAAAGCCAA TTGTCAAAGA
  TCTTTAGAAT TTTAAGACAA GATTTGTTTT TTATTTTTAT GTGTGTAAGT GTTTTACCTG
  GTTTGTGCAT CCCATGCATG CCTGGTGCCC ACAGAGCTCA GAAGAGGATA CCAGATGCCC
  K
  AGAGCTGGAG TTACAGACTG TCGTGAGCCA CTGGGCTGGG AATGGAACTC TTAACTGCTG
  AGTCATCTTT CTAGTCCCTA ATGTTACTTT TTGAGTGAAA TTTTATATGT AATGGATAAT
  TTTTGTTTAA CAATAAAATT CAGAGAACAA AGAATAGATA ACTTTTTGAG CTATGGCTAC
  TGTTAACTCA GGAGACAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8571022	WI_WGS_1_59572560	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6165490					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58998982 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	959 bp downstream
Gm70797	predicted gene, 70797	within coordinates
Rr371350	regulatory region 371350	379 bp downstream
Rr411537	regulatory region 411537	1577 bp distal
Rr411538	regulatory region 411538	1448 bp proximal
Trak2	trafficking protein, kinesin binding 2	within coordinates