rs6165941 SNP Detail

Summary

• ID
  rs6165941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58999027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTAATGTAAT
  TCTACCACAC AAAAGAATTT TCAATTATAT TTGTCATAAA CCTAAGCCTT GTTTTGCAAA
  GCCAATTGTC AAAGATCTTT AGAATTTTAA GACAAGATTT GTtttttatt tttatgtgtg
  taagtgtttt acctggtttg tgcatcccat gcatgcctgg tgcccacaga gctcagaaga
  ggataccaga tgcccnagag ctggagttac agactgtcgt gagccactgg gctgggaatg
  R
  aactcTTAAC TGCTGAGTCA TCTTTCTAGT CCCTAATGTT ACTTTTTGAG TGAAATTTTA
  TATGTAATGG ATAATTTTTG TTTAACAATA AAATTCAGAG AACAAAGAAT AGATAACTTT
  TTGAGCTATG GCTACTGTTA ACTNNGGAGA CAACTGGGTT CCAAGCTTGA GGGANGCAAT
  TAACTGGGGT GTTTGAGTCT TTCTCTACTA CCTTTAACAG TCACTATCCC ACATTTCAAG
  ATTTTCTCAN                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8571475	WI_WGS_1_59572605	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6165941					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58999027 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	914 bp downstream
Gm70797	predicted gene, 70797	within coordinates
Rr371350	regulatory region 371350	424 bp downstream
Rr411537	regulatory region 411537	1622 bp distal
Rr411538	regulatory region 411538	1403 bp proximal
Trak2	trafficking protein, kinesin binding 2	Intron