rs6166072 SNP Detail

Summary

• ID
  rs6166072
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30239583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTAACTAGAT
  GCAAACATAC AAAAGAAGTT AAGAAGTGGG GCGATGCTGG TTTCCTGACA CTTCTGAGAC
  ATCCTTCTTC CCTTTGCTAT GCAGGTCATT AGGCTCTGTG CCAACTCTTC TTCTGTGCCC
  CTCACCACCT TCCCCATGTC CCTCCACCTG GAGCTGTGGG CCTCTGAACA TGACCTGTTT
  TGGGAAATGG ACATTTTTAC AATTGGAAGA ATTTCTTCCT GTTGCCCTGA AGAGgtgtgt
  R
  tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtt tgtTGGTTAG GGTAACCTTG
  CATACACACC CATACATACA CATCATGTAA GTTGTCAGTT GCCTGTGTTT TCTTTCATCC
  ATGTCTACAG CCCTCATGGC TATACTTGGT AAAACCAAAC ATNGCACAAC AATGAAATGC
  ATTGGCTCAA ACAAATCTAT TCCAGGANTT TAAAAAAtta tttatttatt tatttattta
  tttatttaAT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss8571606	WI_WGS_15_30317452	WI	MOUSE	f	SNP	G			A
ss147400350	ENSMUSSNP4903461	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs6166072					SNP	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30239583 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	within coordinates