rs6166149 SNP Detail

Summary

• ID
  rs6166149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:139451558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTTTTA TGTCAGTCTA
  GTGAAATCAG CCCTGGCTTG GGAGTCCTTA CAAAGTTTCC CTAGCAAAGC TTAAAGGGGG
  AAGTGTTTGG TTTTTAGATG ATACAGGGGC CAAGATCCTG TGGCCCCTTC CTCTCAGCCA
  TTTGAAACCC CCGCTGATGC TTCCTCCTCC TCTTAGGCTT TCAGTGAAAA GGCTCTGAGA
  M
  AGGGGAGTTG CGATGTAACA CACATAGAAT CGCATACTGT TTCAGTACAA ATAGAGAAGC
  AAAGAAGAGA ACTCTATCCA TAATTCTACA GTGAAAACGA GCGAGTATCC ACACAAACCC
  TTGTTTCTCT CATCATGGAC TCATTTACAA CTGTGCAGCA GCGAAACGTG CTCAGCCTCA
  CTCTGGTTTG CAGAATTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8571683	WI_WGS_2_140640657	WI	MOUSE	f	SNP							C		A
ss37440717	NES08954747	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6166149					SNP	C	C	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37440717	NES08954747	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139451558 () rs orientation: forward

Symbol	Name	Function Class
Rr566030	regulatory region 566030	within coordinates
Sptlc3	serine palmitoyltransferase, long chain base subunit 3	Intron