rs6166445 SNP Detail

Summary

• ID
  rs6166445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:89269716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAGGGG CCACCCTAGC
  AGCCCTGGGA AAGAAAAGAA AGGAGCCAGC CAAGCCAGAA ACTTTCTCCC CAGGACACCG
  CAAAGCAAAG GATATTCCTG TCCCCATCAT GATCCACTTT ACCCCTCGAA GTCTCGACAG
  CAAAATAGAG ATGCAGCTGG AGGCATCTGG AACCTATGGT AAGGGGACAG CTGGGCTAGG
  Y
  CCTATCCATA CGGAGCAACA GGACACCACC AGCCCCTGGC ACCTGCCTGT GGGGCCTCTT
  GGCCCTCTGG GGAGAGGCCT AGGCAGCTTG CGCCGGCGCC GGCGGCCTGG TGCCAGCTCA
  GGAGACAGAC CCTGCCGTCC TCTAAAGCTG GATCCTCTCC GCCTGGGCAC CGTGGTGAGT
  GTGTGGGATG CTGTGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8571979	WI_WGS_15_90227983	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166445					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:89269716 () rs orientation: forward

Symbol	Name	Function Class
Gm62017	predicted gene, 62017	within coordinates
Klhdc7b	kelch domain containing 7B	within coordinates
Tssr4689	transcription start site region 4689	646 bp downstream
Tssr132668	transcription start site region 132668	629 bp downstream
Tssr132669	transcription start site region 132669	614 bp downstream
Tssr132670	transcription start site region 132670	603 bp downstream