rs6166491 SNP Detail

Summary

• ID
  rs6166491
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:19916251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGTAA AGGGCTCTTT
  GAAAACAATC AACATACCAC TTCTGTCTTG ATCAAGATGC ATTCCTTTAA TCTTATTCTA
  CCTTAAATAA ATGTTTGGAA TTAGCAGCCC GGGGTTGGGT TTCCGCCCTC TAGCGGAACC
  CAGATGGCCT GAGAGCCCAC CGGCAGTAAA AACTACGTCT CCCAGAATGC TCCGGGAAGG
  S
  GGATGCCTCC CCCCCATTGG CCAAGGGTGG GTGACGCTAA GTGTTTTGGC TCGACGGTCA
  CATGTTTCCT TTGTTGTGAG CAGTGGCAGA GACTGGCGGT GGCTCGAGGA GACGCCGGCG
  CAGCAGGGAC GGGGGTCGCC GCTCGTGCCG CTTCCAGCCT GCGCCGAGAG GTACCAGGGT
  GGCCGCTCCA AGCGGCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8572025	WI_WGS_16_19835988	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166491					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:19916251 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8066	CpG island 8066	within coordinates
Gm59707	predicted gene, 59707	127 bp upstream
Klhl24	kelch-like 24	41 bp upstream
Rr317030	regulatory region 317030	1851 bp distal
Rr317031	regulatory region 317031	1051 bp distal
Rr322960	regulatory region 322960	1230 bp distal
Rr325053	regulatory region 325053	within coordinates
Rr404726	regulatory region 404726	within coordinates
Rr404727	regulatory region 404727	531 bp upstream
Tssr137417	transcription start site region 137417	54 bp upstream
Tssr137418	transcription start site region 137418	102 bp upstream
Tssr140348	transcription start site region 140348	579 bp downstream