rs6166519 SNP Detail

Summary

• ID
  rs6166519
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76938369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACATAC ACACACAAAA CAAAACAAAT AATCTCAACA
  GAGAGTAAAG CCTGAAGTGG GGAACGGGGG TCTTAGATGC AAACTGTATC AACCGCAGGG
  ACAGAGGTCC TCAGAGCAGC AATTACAATA AATATAAATG GATTAAATGT TAATCTAAAG
  W
  CAAGAGATTG GGACTCAGCA AGTAACAGTG TCTGCTTGTG ATCCCAGGAA AGAACTGATA
  CCTCTAAGTT GTTCTCCAAT TTCTACATGT GAGCCAGGGT ATAGGCACAC ATGCACACAC
  ACACACATAC ACACACACAC ACACACACAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAA
  AGACAAAGAG AGACAGAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8572053	WI_WGS_10_77542404	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166519					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76938369 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	within coordinates