rs6166532 SNP Detail

Summary

• ID
  rs6166532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:76938382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACACA CACATACACA CACAAAACAA AACAAATAAT CTCAACAGAG AGTAAAGCCT
  GAAGTGGGGA ACGGGGGTCT TAGATGCAAA CTGTATCAAC CGCAGGGACA GAGGTCCTCA
  GAGCAGCAAT TACAATAAAT ATAAATGGAT TAAATGTTAA TCTAAAGTCA AGAGATTGGG
  R
  CTCAGCAAGT AACAGTGTCT GCTTGTGATC CCAGGAAAGA ACTGATACCT CTAAGTTGTT
  CTCCAATTTC TACATGTGAG CCAGGGTATA GGCACACATG CACACACACA CACATACACA
  CACACACACA CACACAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAAGA CAAAGAGAGA
  CAGAAAGACA GACAGACAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8572066	WI_WGS_10_77542417	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6166532					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76938382 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	within coordinates
Rr434399	regulatory region 434399	1261 bp proximal