rs6166563 SNP Detail

Summary

• ID
  rs6166563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58999171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGATGCC CTAGAGCTGG
  AGTTACAGAC TGTCGTGAGC CACTGGGCTG GGAATGGAAC TCTTAACTGC TGAGTCATCT
  TTCTAGTCCC TAATGTTACT TTTTGAGTGA AATTTTATAT GTAATGGATA ATTTTTGTTT
  AACAATAAAA TTCAGAGAAC AAAGAATAGA TAACTTTTTG AGCTATGGCT ACTGTTAACT
  Y
  AGGAGACAAC TGGGTTCCAA GCTTGAGGGA CGCAATTAAC TGGGGTGTTT GAGTCTTTCT
  CTACTACCTT TAACAGTCAC TATCCCACAT TTCAAGATTT TCTCACGAGC CCTCCTCTTT
  CTCACCCTAG AAGTCACATT ACTTCAAAGA CCTTCATTTC CCACTCCATG GCAATCATAG
  CTCATGTTTC AATCTTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8572097	WI_WGS_1_59572749	WI	MOUSE	f	SNP							C		T
ss49400939	NES12799915	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6166563					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49400939	NES12799915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58999171 () rs orientation: forward

Symbol	Name	Function Class
Gm70794	predicted gene, 70794	770 bp downstream
Gm70797	predicted gene, 70797	38 bp downstream
Rr371350	regulatory region 371350	568 bp downstream
Rr411537	regulatory region 411537	1766 bp distal
Rr411538	regulatory region 411538	1259 bp proximal
Rr411539	regulatory region 411539	1938 bp proximal
Trak2	trafficking protein, kinesin binding 2	within coordinates