rs6167054 SNP Detail

Summary

• ID
  rs6167054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27953627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTTCAT CCTACTATAT
  ATGCATTTTA TAACATGATC ACCAAGGGTG GTTCACCACT TTCCAGGAGT ACTCTGTGGC
  TGTTAATGTA GGAAACATAA CTACACATTT GGGAGGATAG TGTAGTTGGG AATGTGTGTA
  TGTCATATAT ACATTGGATC TCTGTGTGTG TCTCAGTCAC ACATTTAACA CTTTCAGAGT
  K
  CAACCTTCTC CTTTCTGTCT GCAGTTCAAG TGTAAAAGTG CTCCACAGTA AACATCTTTA
  AGGCCACGAC TTTATCTATA CATTTTACCT TTTACTTGAG TCTCTGAAAA TGACACTTTT
  ATCTGTATTC TATCCAGGAA AACTGAAGTG TGGGAAACCA GTCTGCTACT CCAGTCTATT
  TACTAGGCTG TGTAGCTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8572588	WI_WGS_10_28037920	WI	MOUSE	f	SNP							G		T
ss52210468	NES15216098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6167054					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52210468	NES15216098	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27953627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1407	CpG island 1407	1092 bp distal
Ptprk	protein tyrosine phosphatase receptor type K	within coordinates
Rr214336	regulatory region 214336	574 bp proximal
Rr224630	regulatory region 224630	within coordinates