rs6167114 SNP Detail

Summary

• ID
  rs6167114
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30239746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAGAATT TCTTCCTGTT
  GCCCTGAAGA GGTGTGTATG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTTTG
  TTGGTTAGGG TAACCTTGCA TACACACCCA TACATACACA TCATGTAAGT TGTCAGTTGC
  CTGTGTTTTC TTTCATCCAT GTCTACAGCC CTCATGGCTA TACTTGGTAA AACCAAACAT
  R
  GCACAACAAT GAAATGCATT GGCTCAAACA AATCTATTCC AGGACTTTAA AAAATTATTT
  ATTTATTTAT TTATTTATTT ATTTAATATC TTGATCACAG CTTCCCCTCC CTCCTCTCCC
  CCAAGTCCCT CTCACCTCCC CTCCCCCATA TATCTCAGGA CTTTAAAGAA AGTTATTTAT
  TAGATGATTA TAAAGTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss8572648	WI_WGS_15_30317615	WI	MOUSE	f	SNP	A							G
ss49433108	NES12619254	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		A	G	G	A	G	A
ss147400355	ENSMUSSNP4865467	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs6167114					SNP	A	A	G	G	G	A	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433108	NES12619254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30239746 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	within coordinates