rs6167223 SNP Detail

Summary

• ID
  rs6167223
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83302156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGTGGAC AACCTCACAA
  TACCTATGAA GTTTCTTGGC CAAGGTCATC CTTTAAATTA TTTAAATAAA TGGCAGAGCT
  GGGAGTCTAA CCTTGATGGT TCTTGCTCCA AACCCTGCCC TTTATTTACC ATTGTGCACA
  TATACATACA TAATCGTAGG TTGAGTGTTG TGAACCAGGA CAGCCTGGGG GGAGGCATTC
  R
  CCTATGATCC ATGCATATAT AAAAACACAC ACATGAAAAC ATGATATGAT GGAAACCATC
  AGAGCCCAGG AAACCACCTC TCTGCACCCA CTTACTATGG GGGGGTTCAT CATTCAGCCC
  AGGTTTTCTC CTTCCAGCGA AGAGGTTTAC TGAGGCTGTC TTGGGGGCTA TTGGCTTTGC
  TCTACACACG TGCAGAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8572757	WI_WGS_11_84062077	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6167223					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83302156 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3411	CpG island 3411	972 bp distal
D11Bhm144	DNA segment, Chr 11, Boehm 144	340 bp proximal
Gm72478	predicted gene, 72478	694 bp upstream
Rasl10b	RAS-like, family 10, member B	within coordinates
Rr452948	regulatory region 452948	1248 bp distal
Rr452949	regulatory region 452949	1113 bp distal
Rr452950	regulatory region 452950	677 bp distal
Tssr103693	transcription start site region 103693	1612 bp downstream
Tssr103694	transcription start site region 103694	1603 bp downstream
Tssr103695	transcription start site region 103695	1581 bp downstream