rs6167840 SNP Detail

Summary

• ID
  rs6167840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132236588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACACACAG TCCAGAGAAT GAGGGCTAGG
  CCTCTCTCTG TCcctttcgg gcctcaattt tctcattctg taaaatgggg ttaaaatacG
  TTTTGTATTT GCTGTCTTTG TCAGACAAAA CCTATATCCT GGCATCTAGT AGGTGCTCCA
  W
  ACACGACATA GACTATGTCC ACTATCGAGA CTGCTGGGAG GGAGACGGGG GCTTTATACT
  GGCATTATAC CTTGTCTCCC TGTGAAGTCT CTCTACGCTC TGAGGAGACA GCAAAACAAA
  CTTTGAGGAC CCCAGAACAA TTTAATAGGA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8573376	WI_WGS_4_130072892	WI	MOUSE	f	SNP							T		A
ss37754394	NES09159437	PERLEGEN	MM_PANEL2	r	SNP	A	A	A	A	A	A		A		A	A	T		A	A	A	A		A
ss37758853	NES09152639	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	A		T	T	T	T		T
ss321333902	CHEV_4_132065192	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6167840					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37754394	NES09159437	PERLEGEN	MM_PANEL	r	SNP	A/T
ss37758853	NES09152639	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132236588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	175 bp proximal
Gm12981	predicted gene 12981	within coordinates
Rr377205	regulatory region 377205	1274 bp downstream
Rr377206	regulatory region 377206	within coordinates
Rr600989	regulatory region 600989	1592 bp distal
Rr600990	regulatory region 600990	within coordinates
Rr600991	regulatory region 600991	362 bp proximal
Rr600992	regulatory region 600992	1214 bp proximal
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	1179 bp downstream
Tssr43679	transcription start site region 43679	1207 bp downstream
Tssr43680	transcription start site region 43680	1216 bp downstream