rs6168501 SNP Detail

Summary

• ID
  rs6168501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34483178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTTCCT CACGGCTGGG
  CAAGCGGGTG AGTATGGGAA CCCTGTGGGA AGGGCTGAGG CTCAGACCAG CCCTGTGACT
  CTCTGTCCCT GTGTCCCCAG GTGTCGGACA TCCTTCGTTA CCTATTCCCC GTGCCAAAAG
  ACGACAGCCA TCGGGTCATC ACCTTTGCAA ACCAGGATGA CTACATTTCA TTCCGGTGGG
  Y
  CCATGGGCTG AGTGTAGGGC CTGTGACCTT TGTAGTTCCT CAGCTAACCC ACAGCCCCTA
  CTGACCCACG TACGTACCTC TGCTTCCTTT TTCCTCAGGC ACCATGTCTA CAAGAAGACA
  GACCACCGCA ATGTGGAGCT GACTGAGGTC GGGCCTCGAT TTGAGCTCAA GTGTGAGTTT
  AGGCTTTAGT TTATGCCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8574037	WI_WGS_1_34898449	WI	MOUSE	f	SNP							T		C
ss51237442	NES14285470	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6168501					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237442	NES14285470	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34483178 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	1696 bp upstream
Gm28306	predicted gene 28306	within coordinates
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Rr15761	regulatory region 15761	1778 bp distal
Rr15762	regulatory region 15762	578 bp distal
Tssr6216	transcription start site region 6216	211 bp downstream
Tssr6217	transcription start site region 6217	760 bp upstream