rs6168779 SNP Detail

Summary

• ID
  rs6168779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:30240033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTTGATC ACAGCTTCCC
  CTCCCTCCTC TCCCCCAAGT CCCTCTCACC TCCCCTCCCC CATATATCTC AGGACTTTAA
  AGAAAGTTAT TTATTAGATG ATTATAAAGT AAGGGGATTT AAAAGAACAT CAAAAATGAT
  ACAGCGTATC TCTTTTTTTA GGTGCAGAGA CTTTCTTTTT GGGGCTTCCC TTCTTTGTTT
  K
  AATTTTAATT TATGTGATTT TTTTTCTCAA TGGGCATAAA AGTTCAGGTG CATCCTTTCT
  TGTTTTCAAT TTGTGTCTCT TCAGCAATGC TCTCTCATTT CTCAGAACGA GGGGAGTGTG
  GCTTCACAGA GTCAATTGGT GGCATCTGTA CCTAGTAGGA GGCAGAAAGC CTTTGTGTTT
  TCTCTCTCAC CACTGCTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss8574316	WI_WGS_15_30317902	WI	MOUSE	f	SNP	G							T
ss49433104	NES12619169	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		G	T	T	G	T	G
ss147400370	ENSMUSSNP6892103	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs6168779					SNP	G	G	T	T	T	G	T	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49433104	NES12619169	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:30240033 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd2	catenin delta 2	Intron
D15Mit249	DNA Segment, Chr 15, Massachusetts Institute of Technology-249	264 bp distal