rs6169223 SNP Detail

Summary

• ID
  rs6169223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109481184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTGCT GTGTTAGGAT
  TGCGTTTGCA GGAGCTAGTC TGCACAGTAT CATGAAACCC TGTTTGGATC TTAAAACGTG
  TTGAAAGCAA GCCTTGCATC GCAGGATTGG ACCTTGCATA TAAATTAGTG CAAGTCCTTG
  TTTTAAGGAG TTTTATGAGG CTGAGTTGAC ATTGCTTAAG AAACAGTTGG AAAAGTTAAG
  Y
  GTAACCTACA GTCATTTAGG GGTATGAGTC ACCTTTCTGA CAAGCCAATA AGGTAAGAGA
  ACCCAGGTTG CTAAACAATT GGGAGCCCAG CCCGAGGGAC CCTGGAAGTC TATTACAGTA
  TCAGTTAAGA AAACAAAGCG GCAGTGTTCT TGCTACTCCG AGGAGGACGA GCTAAGGCTG
  CTAACCAAAC CAAAGGACCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8574761	WI_WGS_3_110073008	WI	MOUSE	f	SNP							C		T
ss46878843	NES10702917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6169223					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878843	NES10702917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109481184 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	398 bp distal
Rr583432	regulatory region 583432	within coordinates
Rr583433	regulatory region 583433	50 bp proximal
Tssr31300	transcription start site region 31300	101 bp upstream
Tssr31301	transcription start site region 31301	133 bp upstream
Tssr31302	transcription start site region 31302	151 bp upstream
Vav3	vav 3 oncogene	Intron