rs6169279 SNP Detail

Summary

• ID
  rs6169279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:96203574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTACCT TTTAACCAAT
  AAAGTAAAAA GGATGGGCAT GCAAAAAGCT CAGTAAATAA AGTGATAAAT GTATAAACAT
  GGGGATCTGT GTTTTATCCC AAAAATTCAT TTAAAAAATC CAGGTATGGT GGCATAGACT
  TCTAACCCCA GATTTCTCAG GAGGCAGAGA GGGTCAGATT GCTATGCCTC ATTGGCTAGA
  Y
  AGTCTTGTCT ATTTGTTGAG TTCCAGGCCA TTGAAAGACC TTGTCTCAAA AAGTCAATGG
  AGCTCAAGAA ATAACCATTT GATCTTTACT ATTCTTGTAA ATCACTGCAT TGTTATCATC
  ACACTTACTT TCTTGATATG GCAAATAAGT GACAGTGATT TTATGCTTCA CACATAAGCG
  CTTAACACAG TTTGAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8574818	WI_WGS_4_94056914	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6169279					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:96203574 () rs orientation: forward

Symbol	Name	Function Class
Cyp2j11	cytochrome P450, family 2, subfamily j, polypeptide 11	within coordinates
Rr376878	regulatory region 376878	295 bp downstream