rs6169356 SNP Detail

Summary

• ID
  rs6169356
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109481265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGCAAG CCTTGCATCG
  CAGGATTGGA CCTTGCATAT AAATTAGTGC AAGTCCTTGT TTTAAGGAGT TTTATGAGGC
  TGAGTTGACA TTGCTTAAGA AACAGTTGGA AAAGTTAAGC GTAACCTACA GTCATTTAGG
  GGTATGAGTC ACCTTTCTGA CAAGCCAATA AGGTAAGAGA ACCCAGGTTG CTAAACAATT
  R
  GGAGCCCAGC CCGAGGGACC CTGGAAGTCT ATTACAGTAT CAGTTAAGAA AACAAAGCGG
  CAGTGTTCTT GCTACTCCGA GGAGGACGAG CTAAGGCTGC TAACCAAACC AAAGGACCGC
  ACTGACTGAC CATGCCAATT TTTACCTTTG TTTCAGAACA AGGGCCATTC AAACCACCAG
  AGGTAAGACT GACATTTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8574895	WI_WGS_3_110073089	WI	MOUSE	f	SNP							G		A
ss46878846	NES10702921	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G		A		G	G	G		A	G	G	A		A
ss320869972	CHEV_3_109376867	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6169356					SNP	G	G	G	A	G	G	G	A	A	G	G	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878846	NES10702921	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109481265 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583431	regulatory region 583431			479 bp distal
Rr583432	regulatory region 583432			32 bp distal
Rr583433	regulatory region 583433			within coordinates
Tssr31300	transcription start site region 31300			20 bp upstream
Tssr31301	transcription start site region 31301			52 bp upstream
Tssr31302	transcription start site region 31302			70 bp upstream
Vav3	vav 3 oncogene			Intron
				mRNA-UTR