rs6169532 SNP Detail

Summary

• ID
  rs6169532
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTACAT ACACCCAAGT
  GGTGCTTCTG CTGTTAATTA GTCTCGGGCC CGGACGATGA CTAAGGTTAG GGTTAGTTTC
  CCAGACCCTG CATGGTAGCT TGCAGTCATC TGAAACTAGT TCCAGGAGAC CTGACACGCA
  CTTCTGAACA CCATAGACAC AGGTAGCACA CATATGTATG TAGGGAGCCA CTTTAAATAA
  M
  ATACATTTTG AATGTGGAAC TTAAGTCTCA ATCCCAGGAA GTGTGGTGCC CATAGTCTCA
  CATTACAGCT GAGATCTACA GCTCTTGATA TTGTAGAGTA GTAAGCCTCT TTTATTTATA
  ACTTGAAGTT TCTCTGTCCC GTTTACTGGC CCCAGTGACT TTAAGACTGT AAATGGTGCA
  CAGTAAGTAG GCTTATACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8575071	WI_WGS_11_49160905	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6169532					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	560 bp distal
Gm25296	predicted gene, 25296	510 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1697 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	591 bp upstream
Tssr101138	transcription start site region 101138	1371 bp downstream
Tssr101139	transcription start site region 101139	1073 bp downstream
Tssr101140	transcription start site region 101140	1049 bp downstream
Tssr101141	transcription start site region 101141	574 bp downstream
Tssr101142	transcription start site region 101142	357 bp upstream
Tssr101143	transcription start site region 101143	824 bp upstream
Tssr101144	transcription start site region 101144	867 bp upstream
Tssr101145	transcription start site region 101145	1980 bp upstream
Tssr107635	transcription start site region 107635	1437 bp upstream