rs6169682 SNP Detail

Summary

• ID
  rs6169682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCCTGC ATGGTAGCTT
  GCAGTCATCT GAAACTAGTT CCAGGAGACC TGACACGCAC TTCTGAACAC CATAGACACA
  GGTAGCACAC ATATGTATGT AGGGAGCCAC TTTAAATAAA ATACATTTTG AATGTGGAAC
  TTAAGTCTCA ATCCCAGGAA GTGTGGTGCC CATAGTCTCA CATTACAGCT GAGATCTACA
  R
  CTCTTGATAT TGTAGAGTAG TAAGCCTCTT TTATTTATAA CTTGAAGTTT CTCTGTCCCG
  TTTACTGGCC CCAGTGACTT TAAGACTGTA AATGGTGCAC AGTAAGTAGG CTTATACCAA
  CCTTTACCAA CCCTTTTAGA CAAGACCATC ATCATGTGGA AGCTGACCAG AGATGAGACC
  AACTATGGCA TACCACAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8575222	WI_WGS_11_49160986	WI	MOUSE	f	SNP							G	A
ss37219196	NES08451716	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G			G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6169682					SNP	G	G	G	G	G	G	G	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219196	NES08451716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692350 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	641 bp distal
Gm25296	predicted gene, 25296	591 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1616 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	510 bp upstream
Tssr101138	transcription start site region 101138	1452 bp downstream
Tssr101139	transcription start site region 101139	1154 bp downstream
Tssr101140	transcription start site region 101140	1130 bp downstream
Tssr101141	transcription start site region 101141	655 bp downstream
Tssr101142	transcription start site region 101142	276 bp upstream
Tssr101143	transcription start site region 101143	743 bp upstream
Tssr101144	transcription start site region 101144	786 bp upstream
Tssr101145	transcription start site region 101145	1899 bp upstream
Tssr107635	transcription start site region 107635	1518 bp upstream