rs6169904 SNP Detail

Summary

• ID
  rs6169904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83334698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGAG GCTCTGAAAC ATTGCCATCA
  R
  CTGTGACTTC CCAGAAGTAA CTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8575445	WI_WGS_11_84095915	WI	MOUSE	f	SNP			A	G
ss38832829	mCV22343089	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		A
ss132469303	ENSMUSSNP2303454	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
ss323767175	CHEV_11_83257374	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6169904					SNP	G	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83334698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3415	CpG island 3415	874 bp distal
Cpgi3416	CpG island 3416	783 bp proximal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452960	regulatory region 452960	1199 bp distal
Rr452961	regulatory region 452961	1349 bp proximal