rs6169983 SNP Detail

Summary

• ID
  rs6169983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83334733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG AAGTAACTCC CTTTGAAGAC
  R
  TACAGTCGCC ATTGCCCATC TATCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8575524	WI_WGS_11_84095950	WI	MOUSE	f	SNP			A	G
ss38843689	mCV22343088	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		G
ss132469307	ENSMUSSNP7246663	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			G
ss323767176	CHEV_11_83257409	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6169983					SNP	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83334733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3415	CpG island 3415	909 bp distal
Cpgi3416	CpG island 3416	748 bp proximal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452960	regulatory region 452960	1234 bp distal
Rr452961	regulatory region 452961	1314 bp proximal