rs6170381 SNP Detail

Summary

• ID
  rs6170381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:10782988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAATAA GGTTGACAGT
  TGCTAGGTAT TTGCTTTTAG TTACAGTTTG TATGAATTGA GTAAGTTGAG ATGTAATTCA
  TGCTCATAAA ACACTGGCTG TCCATGTGTA ATCAATGCAT AGCTACAGCT GGTTGAAGGG
  GACCAAATCC ATTGAAGAGG CGATTTGGTT CCATTTTACC AGCTTTAGCA AAGCATTGCC
  R
  CTGCTGGTGT AGGATCCAAA CAGGTTAAAT GCTCTTTTGT AGAAATATAG CATGACAGGT
  ATTAGAGGTT CCCACACTAG TGTACCAGTT GTTAAACAGA AAATTCACGT GTTTAGGCAT
  ATGTCCTACA CTGCTGTTCT TGCAGCTCAC ATCAGTGCAT CTTTACTTAG TTCTTAAATG
  CACACAGTAG CCTTTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8575923	WI_WGS_18_10650896	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6170381					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10782988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm58661	predicted gene, 58661			1937 bp downstream
Mib1	MIB E3 ubiquitin protein ligase 1			Intron
				Noncoding-Transcript-Variant
Mir133a-1	microRNA 133a-1			12 bp upstream
Mir133a-1hg	Mir133a-1, Mir1b and Mir1a-2 host gene			within coordinates
Rr533799	regulatory region 533799			913 bp distal
Rr533800	regulatory region 533800			1191 bp proximal
Tssr150041	transcription start site region 150041			671 bp downstream
Tssr152436	transcription start site region 152436			76 bp upstream