rs6171058 SNP Detail

Summary

• ID
  rs6171058
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152237688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGCCCT CATGCTCAGG
  ACTTCAAGGT TCCTCTAGAG TACAAAGTCT AGACCCAAGA AAAAGATGGG AGATGGGAGA
  AAGCAGAAAG AGAAAGTAAG GAGGGAGTCA GCAAAATGAC TGGGTAAAGG GGCTTGCTGC
  CAAGCCTAAC AACCTGAGTT CGATCCCAGG GACCCACATG ATGGAAGGAG AGCCTGAGCT
  M
  CCGAAAGTTG TCTTCTGCCC CCACATGCGC AGTGTAGCAA TGGCCCCCAA GTAAATAAAC
  ACAATGATTA GAGGGGGGGA CCCTCAAAAC TCATATGATC TATTTCTTTC TTAAGTAAAA
  GGAAGTTAGG ACTTAGAACT GTTTGGACCA GGGTGTGGAT GACTCTGATT ACTCAGGTTG
  GTGTGTGTGT GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8576602	WI_WGS_4_147560891	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6171058					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152237688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15395	CpG island 15395	677 bp distal
Cpgi15396	CpG island 15396	326 bp proximal
Espn	espin	860 bp upstream
Rr398896	regulatory region 398896	549 bp upstream
Rr605762	regulatory region 605762	510 bp distal
Rr605763	regulatory region 605763	390 bp distal
Rr605764	regulatory region 605764	112 bp proximal
Rr605765	regulatory region 605765	739 bp proximal
Rr605766	regulatory region 605766	1955 bp proximal
Tssr44823	transcription start site region 44823	834 bp upstream