rs6171880 SNP Detail

Summary

• ID
  rs6171880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10612909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTCCTTG GGGCTTTCTG
  GTGGGCACCC TACCCTTGCC TATCTGAAGT GGAACTCCAC CAGCTTCCAC AGGCACCCTA
  CCATTTACCA CTTCGATGGC ACCTCACGCC CCTTTCAGAG CCCCCTTTGG CTTAGCTATT
  AAGTTGTTCT GTAGATCCCA GCTGCCGGAT TCTCTGCCTC AGCTGTTGCT ATCATCGTTT
  Y
  TATGTGTGAC ATCACTGTTG GTCTGGTTTG TCTTCACTGG TTTTGACTTC TGAGAGGAAA
  AAAGGACTTG GCCCTAGGGA AAATCCCCAG CAAACTTTCC TGTACTGCTA TGGTTCCCCC
  TAGGTTTCCA CATTTGACCC AGATTATTAA CCCTAAGAGC CAGGCAAGTT CGTCTTATCC
  TGTATCATTT CTGTCTGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8577425	WI_WGS_19_9971296	WI	MOUSE	f	SNP							C		T
ss50601040	NES13642645	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6171880					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50601040	NES13642645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10612909 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10616	CpG island 10616	852 bp distal
Cpgi10617	CpG island 10617	186 bp distal
Rr362969	regulatory region 362969	within coordinates
Tssr155079	transcription start site region 155079	1300 bp downstream
Tssr155080	transcription start site region 155080	1233 bp downstream
Tssr155081	transcription start site region 155081	1221 bp downstream
Vwce	von Willebrand factor C and EGF domains	within coordinates