rs6172311 SNP Detail

Summary

• ID
  rs6172311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:79832713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGGTTC CAGGTGCCTA
  CTCTCCCTTG CCCTTCCTTA TCCTTCCGGG GAGTGTGGGA AAAATGGACC ACCGATCCTC
  ACAGCGGTCA TCTGGTCACC TCGAGGGACC TCTGCCAACC TACACCTCCA GTGTCCCACT
  TTCCAAATGA GGCCTGTCAC CCCCCACCCC CCAGATCTCA AATTTCACTT TATGAAAGAA
  R
  AAAGTCCCCG AGTGGAAGCC GCCAATTTCC ATGTAGATGG TTAAACTTTG GCAATTTCCC
  TCTCTGTCAG CCTCAGTTTC CCTATCGGTA TCATGAAGCA GGCCACAGGC ATACAGTTCC
  GGGGGGAAAT AAAATAACGA AATCAGGAAT GGCGTGCTCA AGGAGCCTGT CCCTGACTCC
  TCCTAGCCGG CGGTCTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8577856	WI_WGS_10_80454213	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6172311					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:79832713 () rs orientation: forward

Symbol	Name	Function Class
Abca7	ATP-binding cassette, sub-family A member 7	within coordinates
Cnn2	calponin 2	1479 bp downstream
Cpgi1834	CpG island 1834	116 bp distal
Cpgi1835	CpG island 1835	344 bp proximal
Rr225140	regulatory region 225140	within coordinates
Rr402033	regulatory region 402033	291 bp downstream
Tssr94447	transcription start site region 94447	1844 bp downstream
Tssr94448	transcription start site region 94448	1789 bp downstream
Tssr94449	transcription start site region 94449	1577 bp downstream
Tssr94450	transcription start site region 94450	404 bp downstream
Tssr94451	transcription start site region 94451	374 bp downstream
Tssr94452	transcription start site region 94452	355 bp downstream
Tssr94453	transcription start site region 94453	328 bp downstream
Tssr94454	transcription start site region 94454	584 bp upstream
Tssr98373	transcription start site region 98373	1531 bp upstream
Tssr98374	transcription start site region 98374	1477 bp upstream